Juniata College competes in NCAA Division III (with football).
| Name | Participants | |
|---|---|---|
| Men | Women | |
| Baseball | 20 | 0 |
| Basketball | 16 | 14 |
| Field Hockey | 0 | 27 |
| Football | 100 | 0 |
| Soccer | 24 | 26 |
| Softball | 0 | 18 |
| Swimming | 0 | 13 |
| Tennis | 15 | 11 |
| Track and Field, Indoor | 32 | 19 |
| Track and Field, Outdoor | 26 | 22 |
| Track and Field, X-Country | 13 | 9 |
| Volleyball | 17 | 20 |