Cornerstone University competes in NAIA Division II.
| Name | Participants | |
|---|---|---|
| Men | Women | |
| Baseball | 35 | 0 |
| Basketball | 13 | 15 |
| Golf | 7 | 6 |
| Soccer | 27 | 30 |
| Softball | 0 | 23 |
| Tennis | 8 | 7 |
| Track and Field, Indoor | 29 | 34 |
| Track and Field, Outdoor | 29 | 34 |
| Track and Field, X-Country | 17 | 13 |
| Volleyball | 0 | 16 |
| Bowling | 9 | 12 |