Mount Mercy University competes in NAIA Division II.
| Name | Participants | |
|---|---|---|
| Men | Women | |
| Baseball | 39 | 0 |
| Basketball | 34 | 25 |
| Golf | 13 | 8 |
| Soccer | 40 | 30 |
| Softball | 0 | 36 |
| Track and Field, Indoor | 32 | 39 |
| Track and Field, Outdoor | 34 | 39 |
| Track and Field, X-Country | 14 | 20 |
| Volleyball | 0 | 23 |
| Bowling | 18 | 19 |