Flagler College-St Augustine competes in NCAA Division II (without football).
| Name | Participants | |
|---|---|---|
| Men | Women | |
| Baseball | 40 | 0 |
| Basketball | 13 | 13 |
| Golf | 8 | 7 |
| Soccer | 28 | 23 |
| Softball | 0 | 22 |
| Tennis | 8 | 9 |
| Track and Field, Indoor | 11 | 12 |
| Track and Field, X-Country | 11 | 10 |
| Volleyball | 0 | 12 |