The Master's College and Seminary competes in NAIA Division I.
| Name | Participants | |
|---|---|---|
| Men | Women | |
| Baseball | 34 | 0 |
| Basketball | 12 | 18 |
| Golf | 8 | 0 |
| Soccer | 25 | 31 |
| Track and Field, Indoor | 0 | 12 |
| Track and Field, Outdoor | 14 | 12 |
| Track and Field, X-Country | 10 | 8 |
| Volleyball | 0 | 16 |